SEED Subsystem: Coenzyme B12 biosynthesis in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
5,6-dimethylbenzimidazole synthase, flavin destructase family No genes
ATPase component CbiO of energizing module of cobalt ECF transporter No genes
Additional lipoprotein component of predicted cobalamin ECF transporter No genes
Additional substrate-specific component CbiN of cobalt ECF transporter No genes
Adenosylcobinamide amidohydrolase (EC 3.5.1.90) No genes
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) GFF370
Adenosylcobinamide-phosphate synthase No genes
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) GFF3834
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) GFF3835
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) No genes
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase GFF826
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
ChlD component of cobalt chelatase involved in B12 biosynthesis No genes
ChlI component of cobalt chelatase involved in B12 biosynthesis No genes
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) GFF371
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) No genes
Cob(II)alamin reductase No genes
CobN component of cobalt chelatase involved in B12 biosynthesis GFF3290
CobW GTPase involved in cobalt insertion for B12 biosynthesis GFF3291
Cobalamin biosynthesis protein CbiG No genes
Cobalamin biosynthesis protein CobG GFF3289
Cobalamin synthase No genes
Cobalamine-related hypothetical metal-binding protein CrdX No genes
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) GFF3287
Cobalt-precorrin-3b C17-methyltransferase GFF3286
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) GFF3282
Cobalt-precorrin-6 synthase, anaerobic GFF3281
Cobalt-precorrin-6x reductase (EC 1.3.1.54) GFF3285
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) GFF3284
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) GFF3284
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) GFF3288
Cobyric acid synthase No genes
Cobyrinic acid A,C-diamide synthase GFF3280
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter No genes
HoxN/HupN/NixA family cobalt transporter No genes
HupE-UreJ family cobalt transporter GFF1542
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) No genes
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) GFF3391
Optional hypothetical component of the B12 transporter BtuM No genes
Optional hypothetical component of the B12 transporter BtuN No genes
Outer membrane vitamin B12 receptor BtuB GFF2992
Precorrin-6A synthase (EC 2.1.1.152) No genes
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62) No genes
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73) No genes
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis No genes
Predicted cobalt ABC transporter periplasmic component No genes
Predicted cobalt transporter CbtA No genes
Predicted cobalt transporter CbtC GFF821
Predicted cobalt transporter in Bacteroides_Porphyromonas No genes
Predicted cobalt transporter in Mycobacteria No genes
Predicted cobalt transporter in Thermoplasma No genes
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria No genes
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis No genes
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) No genes
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) No genes
Substrate-specific component CbiM of cobalt ECF transporter No genes
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole No genes
Substrate-specific component CbrT of predicted cobalamin ECF transporter No genes
Threonine kinase in B12 biosynthesis No genes
Transmembrane component CbiQ of energizing module of cobalt ECF transporter No genes
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter No genes
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) GFF1971
Vitamin B12 ABC transporter, ATPase component BtuD GFF2995
Vitamin B12 ABC transporter, B12-binding component BtuF No genes
Vitamin B12 ABC transporter, permease component BtuC GFF2994
  GFF3623

Or select organism:

Or view this subsystem at the SEED (slow)