SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in Pseudomonas simiae WCS417

Experiments:

Role Gene Name  
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) No genes
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF) No genes
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) No genes
DNA topoisomerase I (EC 5.99.1.2) PS417_07590
GTP-sensing transcriptional pleiotropic repressor codY No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication PS417_01935
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9) PS417_00090
Peptide deformylase (EC 3.5.1.88) PS417_00095
  PS417_22045
Protein of unknown function DUF1447 No genes
Protein of unknown function Smg No genes
Protein serine/threonine phosphatase PrpC, regulation of stationary phase PS417_15260
Ribonuclease HII (EC 3.1.26.4) PS417_06280
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) PS417_23160
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) PS417_00085
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) PS417_03300
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) PS417_25735
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I No genes
Trk system potassium uptake protein TrkA PS417_00080
Uncharacterized protein with LysM domain, COG1652 PS417_00100
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA No genes
Zn-dependent hydrolase, RNA-metabolising No genes
cytochrome d ubiquinol oxidase, subunit II-related protein No genes
tRNA:m(5)U-54 MTase gid No genes

Or select organism:

Or view this subsystem at the SEED (slow)