SEED Subsystem: Arginine and Ornithine Degradation in Pseudomonas simiae WCS417

Experiments:

Role Gene Name  
Agmatinase (EC 3.5.3.11) PS417_20180
Agmatine deiminase (EC 3.5.3.12) PS417_01340
Arginase (EC 3.5.3.1) PS417_05475
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ PS417_01490
Arginine N-succinyltransferase (EC 2.3.1.109) PS417_21700
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) PS417_21705
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) PS417_04005
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) PS417_22330
Arginine pathway regulatory protein ArgR, repressor of arg regulon PS417_21720
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP PS417_21725
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein PS417_10900
  PS417_21745
Arginine/ornithine ABC transporter, permease protein AotM PS417_21735
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD PS417_22320
  PS417_22325
Biosynthetic arginine decarboxylase (EC 4.1.1.19) PS417_03005
Carbamate kinase (EC 2.7.2.2) PS417_22340
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) PS417_02175
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) PS417_06395
  PS417_01500
  PS417_17605
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) PS417_04710
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) PS417_06405
  PS417_17600
  PS417_26110
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) PS417_06410
  PS417_13555
  PS417_17595
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) PS417_06415
  PS417_13550
  PS417_01495
  PS417_17590
  PS417_01800
  PS417_01805
  PS417_26100
  PS417_28190
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) PS417_24260
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) PS417_05595
  PS417_22335
Ornithine cyclodeaminase (EC 4.3.1.12) PS417_10915
  PS417_17585
  PS417_26095
Ornithine decarboxylase (EC 4.1.1.17) PS417_04005
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) PS417_21690
Succinylglutamate desuccinylase (EC 3.5.1.96) PS417_21680
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) PS417_21695
Succinylornithine transaminase (EC 2.6.1.81) PS417_21710
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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