SEED Subsystem: TCA Cycle in Variovorax sp. SCN45

Role	Gene	Name
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	GFF979
Aconitate hydratase (EC 4.2.1.3)	No genes
Aconitate hydratase 2 (EC 4.2.1.3)	GFF3905
Aconitate hydratase X, predicted	No genes
Aconitate hydratase large subunit (EC 4.2.1.3)	No genes
Aconitate hydratase small subunit (EC 4.2.1.3)	No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)	No genes
Citrate synthase (si) (EC 2.3.3.1)	GFF3894
	GFF5615
	GFF6008
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)	GFF7475
	GFF981
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	GFF970
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	GFF7534
	GFF980
Fumarate hydratase class I (EC 4.2.1.2)	No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	GFF483
Fumarate hydratase class II (EC 4.2.1.2)	GFF1887
	GFF479
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	GFF343
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	GFF2590
Malate dehydrogenase (EC 1.1.1.37)	GFF1718
	GFF3901
	GFF414
	GFF4621
	GFF7263
Malate:quinone oxidoreductase (EC 1.1.5.4)	No genes
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425	No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	GFF134
	GFF3897
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	GFF3896
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	GFF5406
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	GFF5405
Transcriptional regulator of succinyl CoA synthetase operon	No genes
hypothetical protein that often co-occurs with aconitase	No genes