SEED Subsystem: Polyhydroxybutyrate metabolism in Variovorax sp. SCN45

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) GFF1342
  GFF3380
  GFF361
  GFF4320
  GFF4568
  GFF4608
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) GFF3603
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) GFF1342
  GFF4320
  GFF4568
3-ketoacyl-CoA thiolase (EC 2.3.1.16) GFF1993
  GFF5684
Acetoacetyl-CoA reductase (EC 1.1.1.36) GFF1693
  GFF6950
  GFF821
Acetoacetyl-CoA synthetase (EC 6.2.1.16) GFF2007
  GFF3421
  GFF6538
Acetyl-CoA acetyltransferase (EC 2.3.1.9) GFF2965
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) GFF1032
  GFF3501
  GFF3987
  GFF405
  GFF5457
  GFF7514
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) GFF1240
  GFF1342
  GFF1460
  GFF1461
  GFF1482
  GFF2128
  GFF2283
  GFF2642
  GFF2684
  GFF2700
  GFF2966
  GFF3330
  GFF3377
  GFF3602
  GFF362
  GFF4202
  GFF4311
  GFF4327
  GFF4329
  GFF4334
  GFF4568
  GFF4572
  GFF4601
  GFF4608
  GFF461
  GFF4865
  GFF4867
  GFF5577
  GFF6051
  GFF6089
  GFF6313
  GFF7050
  GFF717
  GFF7362
  GFF7367
  GFF7368
Intracellular PHB depolymerase (EC 3.1.1.-) GFF7960
  GFF943
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF GFF4991
Polyhydroxyalkanoic acid synthase GFF2047
  GFF7240
  GFF808
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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