SEED Subsystem: Oxidative stress in Variovorax sp. SCN45

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein GFF1128
  GFF1285
Catalase (EC 1.11.1.6) GFF4692
  GFF6239
  GFF7133
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR GFF7296
Ferroxidase (EC 1.16.3.1) GFF5550
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator GFF4708
  GFF5549
  GFF5628
Iron-binding ferritin-like antioxidant protein GFF5550
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) GFF1125
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO No genes
Non-specific DNA-binding protein Dps GFF5550
Organic hydroperoxide resistance protein GFF3434
  GFF3569
Organic hydroperoxide resistance transcriptional regulator GFF3570
Paraquat-inducible protein A GFF1387
  GFF1388
Paraquat-inducible protein B GFF1389
Peroxidase (EC 1.11.1.7) GFF4692
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) GFF1412
  GFF651
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) GFF348
  GFF3506
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR GFF7059
bacteriophytochrome heme oxygenase BphO GFF652
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family GFF2082
  GFF3384
  GFF3497
  GFF363
  GFF4899
  GFF6037
  GFF663
  GFF6806
  GFF6865
  GFF6947
transcriptional regulator, Fur family No genes

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