SEED Subsystem: Isoprenoid Biosynthesis in Variovorax sp. SCN45

Experiments:

Role Gene Name  
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) GFF387
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) GFF6130
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) GFF995
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) GFF410
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) GFF411
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) GFF2350
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) GFF5702
  GFF7579
Acetyl-CoA acetyltransferase (EC 2.3.1.9) GFF2965
Candidate gene for the hypothesized phosphomevalonate decarboxylase No genes
Dimethylallyltransferase (EC 2.5.1.1) GFF6129
Diphosphomevalonate decarboxylase (EC 4.1.1.33) No genes
Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) GFF6129
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34) GFF3373
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) GFF4300
Isopentenyl phosphate kinase No genes
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) No genes
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2) No genes
Mevalonate kinase (EC 2.7.1.36) No genes
Phosphomevalonate kinase (EC 2.7.4.2) No genes
Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) No genes

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