SEED Subsystem: Heat shock dnaK gene cluster extended in Variovorax sp. SCN45

Experiments:

Role Gene Name  
Chaperone protein DnaJ GFF2930
Chaperone protein DnaK GFF2929
  GFF7899
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX GFF1246
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) GFF6322
Heat shock protein GrpE GFF2928
  GFF7900
Heat-inducible transcription repressor HrcA GFF2359
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) GFF2382
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH GFF2310
  GFF7662
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB GFF2383
Ribonuclease PH (EC 2.7.7.56) GFF2381
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) GFF3255
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) GFF4440
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) GFF528
Signal peptidase-like protein No genes
Translation elongation factor LepA GFF3867
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I GFF3735
tmRNA-binding protein SmpB GFF213

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