SEED Subsystem: De Novo Purine Biosynthesis in Variovorax sp. SCN45

Experiments:

Role Gene Name  
Adenylosuccinate lyase (EC 4.3.2.2) GFF2598
  GFF5431
  GFF5944
Amidophosphoribosyltransferase (EC 2.4.2.14) GFF3089
IMP cyclohydrolase (EC 3.5.4.10) GFF2146
IMP cyclohydrolase (EC 3.5.4.10) [alternate form] No genes
Phosphoribosylamine--glycine ligase (EC 6.3.4.13) GFF302
  GFF7756
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) GFF5513
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) GFF5512
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) GFF5509
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) GFF2146
Phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form] No genes
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) GFF3941
  GFF7876
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) No genes
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) GFF1324
Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) GFF1324
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) GFF6047
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) GFF3604
  GFF7521
Possible subunit variant of phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form] No genes
Possible third subunit-variant of phosphoribosylaminoimidazolecarboxamide formyltransferase [alternate form] No genes
PurR: transcription regulator associated with purine metabolism No genes
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) GFF2349
YabJ, a purine regulatory protein and member of the highly conserved YjgF family No genes

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