SEED Subsystem: DNA Repair Base Excision in Variovorax sp. SCN45

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC GFF3697
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD GFF6242
DNA ligase (EC 6.5.1.2) GFF1299
DNA polymerase I (EC 2.7.7.7) GFF4006
DNA polymerase II (EC 2.7.7.7) GFF1455
  GFF7213
DNA-3-methyladenine glycosylase (EC 3.2.2.20) GFF6835
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) GFF5472
  GFF549
Endonuclease III (EC 4.2.99.18) GFF418
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) GFF339
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) GFF2353
  GFF7985
Ku domain protein GFF6243
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) GFF6700
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 GFF5889
  GFF868

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