SEED Subsystem: L-Arabinose utilization in Variovorax sp. OAS795

Experiments:

Role Gene Name  
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) ABID97_RS06830
  ABID97_RS09960
  ABID97_RS10380
  ABID97_RS22175
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55) No genes
Alpha-N-arabinofuranosidase (EC 3.2.1.55) No genes
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) No genes
Alpha-N-arabinofuranosidase II (EC 3.2.1.55) No genes
Alpha-arabinosides ABC transport system, permease protein 1 No genes
Alpha-arabinosides ABC transport system, permease protein 2 No genes
Alpha-arabinosides ABC transport system, substrate-binding protein No genes
Alternative L-arabinose isomerase (EC 5.3.1.4) No genes
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) No genes
Arabinose operon protein AraL No genes
Arabinose operon regulatory protein No genes
Arabinose-proton symporter No genes
Arabinose-regulated TonB-dependent outer membrane receptor No genes
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase No genes
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster No genes
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) ABID97_RS06875
  ABID97_RS09965
L-arabinolactonase (EC 3.1.1.15) ABID97_RS06815
L-arabinose 1-dehydrogenase (EC 1.1.1.46) No genes
L-arabinose isomerase (EC 5.3.1.4) No genes
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) ABID97_RS06845
L-arabinose transport system permease protein (TC 3.A.1.2.2) ABID97_RS06850
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) ABID97_RS06840
L-arabinose-specific 1-epimerase (mutarotase) No genes
L-arabonate dehydratase (EC 4.2.1.25) ABID97_RS06870
  ABID97_RS21205
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) No genes
Possible GPH family transporter (TC 2.A.2) for arabinosides No genes
Predicted L-arabinose ABC transport system, ATP-binding protein ABID97_RS06855
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein No genes
Predicted L-arabinose ABC transport system, permease protein 1 No genes
Predicted L-arabinose ABC transport system, permease protein 2 No genes
Predicted L-arabinose isomerase (EC 5.3.1.4) No genes
Predicted arabinose ABC transporter, permease protein 1 No genes
Predicted arabinose ABC transporter, permease protein 2 No genes
Predicted arabinose ABC transporter, substrate binding protein No genes
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon No genes
Protein AraJ precursor No genes
Putative oxidoreductase in arabinose utilization cluster ABID97_RS01605
  ABID97_RS06820
Ribulokinase (EC 2.7.1.16) No genes
Transcriptional regulator of the arabinose operon in Shewanella, GntR family No genes
Transcriptional repressor of arabinoside utilization operon, GntR family No genes
alternative Ribulokinase (EC 2.7.1.16) No genes

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