SEED Subsystem: Arginine and Ornithine Degradation in Variovorax sp. OAS795

Experiments:

Role Gene Name  
Agmatinase (EC 3.5.3.11) ABID97_RS21560
Agmatine deiminase (EC 3.5.3.12) No genes
Arginase (EC 3.5.3.1) ABID97_RS00170
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ No genes
Arginine N-succinyltransferase (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) No genes
Arginine pathway regulatory protein ArgR, repressor of arg regulon No genes
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP No genes
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein No genes
Arginine/ornithine ABC transporter, permease protein AotM No genes
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD ABID97_RS27060
Biosynthetic arginine decarboxylase (EC 4.1.1.19) No genes
Carbamate kinase (EC 2.7.2.2) No genes
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) ABID97_RS00240
  ABID97_RS27590
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) No genes
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) No genes
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) No genes
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) No genes
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) ABID97_RS08630
  ABID97_RS26990
Ornithine cyclodeaminase (EC 4.3.1.12) ABID97_RS13380
  ABID97_RS13505
  ABID97_RS24155
  ABID97_RS25060
Ornithine decarboxylase (EC 4.1.1.17) No genes
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) No genes
Succinylglutamate desuccinylase (EC 3.5.1.96) ABID97_RS04915
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) No genes
Succinylornithine transaminase (EC 2.6.1.81) No genes
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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