SEED Subsystem: TCA Cycle in Sphingobium sp. HT1-2

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) GFF2448
Aconitate hydratase (EC 4.2.1.3) GFF2296
Aconitate hydratase 2 (EC 4.2.1.3) GFF3523
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) GFF3592
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) GFF4978
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) GFF2446
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) GFF3931
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) GFF2447
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) GFF683
Fumarate hydratase class II (EC 4.2.1.2) GFF3055
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) GFF2437
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) GFF2450
Malate:quinone oxidoreductase (EC 1.1.5.4) GFF163
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) GFF477
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) GFF2453
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) GFF2449
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) GFF1707
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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