SEED Subsystem: Polyhydroxybutyrate metabolism in Sphingobium sp. HT1-2

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) GFF1394
  GFF1580
  GFF4746
  GFF5121
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) GFF4893
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) GFF1394
  GFF1580
  GFF5121
3-ketoacyl-CoA thiolase (EC 2.3.1.16) GFF4928
Acetoacetyl-CoA reductase (EC 1.1.1.36) GFF2893
Acetoacetyl-CoA synthetase (EC 6.2.1.16) GFF4879
Acetyl-CoA acetyltransferase (EC 2.3.1.9) GFF1374
  GFF141
  GFF5122
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) GFF2566
D-beta-hydroxybutyrate permease GFF1556
  GFF1906
Enoyl-CoA hydratase (EC 4.2.1.17) GFF1379
  GFF1394
  GFF1404
  GFF1408
  GFF1547
  GFF1867
  GFF2444
  GFF4618
  GFF4934
  GFF5103
  GFF5121
  GFF893
  GFF917
  GFF922
Intracellular PHB depolymerase (EC 3.1.1.-) GFF1756
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase GFF142
  GFF5210
  GFF5239
  GFF645
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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