SEED Subsystem: Oxidative stress in Sphingobium sp. HT1-2

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein GFF4417
  GFF5367
  GFF733
Catalase (EC 1.11.1.6) GFF415
  GFF4719
  GFF5112
  GFF5316
  GFF639
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR GFF3939
Ferroxidase (EC 1.16.3.1) GFF3338
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator GFF1271
  GFF2392
  GFF355
  GFF4425
Iron-binding ferritin-like antioxidant protein GFF3338
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR GFF1638
  GFF4353
NnrS protein involved in response to NO No genes
Non-specific DNA-binding protein Dps GFF3338
Organic hydroperoxide resistance protein GFF2220
  GFF4709
Organic hydroperoxide resistance transcriptional regulator GFF2219
Paraquat-inducible protein A No genes
Paraquat-inducible protein B No genes
Peroxidase (EC 1.11.1.7) GFF415
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) GFF5140
  GFF650
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) GFF1763
Superoxide dismutase [Fe] (EC 1.15.1.1) GFF322
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) GFF3386
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR GFF1286
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family GFF5044
transcriptional regulator, Fur family No genes

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