SEED Subsystem: Heat shock dnaK gene cluster extended in Sphingobium sp. HT1-2

Experiments:

Role Gene Name  
Chaperone protein DnaJ GFF472
Chaperone protein DnaK GFF473
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX No genes
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) GFF307
Heat shock protein GrpE GFF2613
Heat-inducible transcription repressor HrcA GFF2614
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) GFF2618
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH GFF4061
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB GFF2622
Ribonuclease PH (EC 2.7.7.56) GFF2617
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) GFF1069
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) GFF481
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) GFF2465
Signal peptidase-like protein No genes
Translation elongation factor LepA GFF3138
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I GFF309
tmRNA-binding protein SmpB GFF3116

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