SEED Subsystem: DNA-replication in Sphingobium sp. HT1-2

Experiments:

Role Gene Name  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) GFF3604
ATP-dependent DNA helicase RecQ GFF798
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA GFF2470
  GFF384
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) GFF492
DNA polymerase I (EC 2.7.7.7) GFF3778
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) GFF3104
  GFF3908
  GFF4668
  GFF4854
  GFF5145
DNA polymerase III beta subunit (EC 2.7.7.7) GFF715
DNA polymerase III chi subunit (EC 2.7.7.7) GFF175
DNA polymerase III delta prime subunit (EC 2.7.7.7) GFF5302
DNA polymerase III delta subunit (EC 2.7.7.7) GFF4144
DNA polymerase III epsilon subunit (EC 2.7.7.7) GFF4167
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) GFF1676
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) GFF2092
  GFF5410
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN GFF2340
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication GFF4571
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA GFF1074
Holliday junction DNA helicase RuvB GFF1075
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein GFF3120
Recombination protein RecR GFF2663
Replicative DNA helicase (EC 3.6.1.-) GFF1458
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) GFF3095
Transcription-repair coupling factor GFF3606

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