SEED Subsystem: DNA Repair Base Excision in Rhizobium sp. OAE497

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC ABIE40_RS04635
  ABIE40_RS28530
  ABIE40_RS29190
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABIE40_RS26435
  ABIE40_RS27965
  ABIE40_RS28460
  ABIE40_RS29525
DNA ligase (EC 6.5.1.2) ABIE40_RS11775
DNA polymerase I (EC 2.7.7.7) ABIE40_RS00490
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABIE40_RS03590
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABIE40_RS14910
  ABIE40_RS17465
Endonuclease III (EC 4.2.99.18) ABIE40_RS16960
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABIE40_RS01590
Ku domain protein ABIE40_RS26420
  ABIE40_RS27000
  ABIE40_RS27005
  ABIE40_RS29755
  ABIE40_RS29760
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABIE40_RS08655
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABIE40_RS14835

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