SEED Subsystem: TCA Cycle in Pseudomonas putida KT2440

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) PP_4189
Aconitate hydratase (EC 4.2.1.3) PP_2112
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) PP_4194
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) PP_5366
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) PP_4188
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) PP_0897
Fumarate hydratase class II (EC 4.2.1.2) PP_0944
  PP_1755
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) PP_4011
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) PP_0654
  PP_2835
Malate:quinone oxidoreductase (EC 1.1.5.4) PP_0751
  PP_1251
  PP_2925
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) PP_4191
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) PP_4190
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) PP_4185
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) PP_4186
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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