SEED Subsystem: Polyamine Metabolism in Pseudomonas putida KT2440

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) PP_1481
  PP_2801
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) PP_3254
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) PP_0412
  PP_1486
  PP_2870
Agmatinase (EC 3.5.3.11) PP_2196
  PP_4523
Agmatine deiminase (EC 3.5.3.12) PP_0266
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) PP_0864
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD PP_1002
  PP_1003
Biosynthetic arginine decarboxylase (EC 4.1.1.19) PP_0567
Carbamate kinase (EC 2.7.2.2) PP_0999
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter PP_0410
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) PP_0864
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion No genes
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter PP_0409
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) PP_2195
  PP_3147
  PP_3719
  PP_5180
  PP_5181
  PP_5341
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) PP_0411
  PP_1484
  PP_1722
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) PP_5179
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) PP_5178
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) PP_5177
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) PP_0413
  PP_1483
  PP_3815
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) PP_0414
  PP_1482
Spermidine synthase (EC 2.5.1.16) PP_1867
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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