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SEED Subsystem: Methionine Biosynthesis in
Pseudomonas putida KT2440
Experiments:
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Role
Gene
Name
5,10-methylenetetrahydrofolate reductase (
EC 1.5.1.20
)
PP
_4638
PP
_4977
5-methyltetrahydrofolate--homocysteine methyltransferase (
EC 2.1.1.13
)
PP
_2375
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (
EC 2.1.1.14
)
PP
_2698
PP
_4637
Adenosylhomocysteinase (
EC 3.3.1.1
)
PP
_4976
Archaeal S-adenosylmethionine synthetase (
EC 2.5.1.6
)
No genes
Betaine--homocysteine S-methyltransferase (
EC 2.1.1.5
)
No genes
Cystathionine beta-lyase (
EC 4.4.1.8
)
PP
_4348
Cystathionine beta-lyase, type II (
EC 4.4.1.8
)
No genes
Cystathionine beta-synthase (
EC 4.2.1.22
)
No genes
Cystathionine gamma-lyase (
EC 4.4.1.1
)
PP
_4594
Cystathionine gamma-synthase (
EC 2.5.1.48
)
PP
_0659
Cysteine synthase (
EC 2.5.1.47
)
PP
_1113
PP
_4571
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
No genes
Homocysteine S-methyltransferase (
EC 2.1.1.10
)
PP
_0658
PP
_2776
Homoserine O-acetyltransferase (
EC 2.3.1.31
)
PP
_5097
Homoserine O-succinyltransferase (
EC 2.3.1.46
)
No genes
Homoserine dehydrogenase (
EC 1.1.1.3
)
PP
_0664
PP
_1470
Homoserine kinase (
EC 2.7.1.39
)
PP
_0121
Methionine ABC transporter ATP-binding protein
PP
_0114
PP
_0220
PP
_0507
Methionine ABC transporter permease protein
PP
_0113
PP
_0219
Methionine ABC transporter substrate-binding protein
PP
_0112
PP
_0221
PP
_5165
Methionine repressor MetJ
No genes
Methionine synthase activation domain (
EC 2.1.1.13
)
No genes
Methionine transporter MetT
No genes
O-acetylhomoserine sulfhydrylase (
EC 2.5.1.49
)
PP
_0875
PP
_2001
PP
_2528
PP
_2549
PP
_4548
O-succinylhomoserine sulfhydrylase (
EC 2.5.1.48
)
PP
_2001
PP
_2528
Predicted regulator of methionine metabolism, ArsR family
No genes
S-adenosylhomocysteine nucleosidase (
EC 3.2.2.9
)
PP
_3254
S-adenosylmethionine synthetase (
EC 2.5.1.6
)
PP
_4967
S-ribosylhomocysteine lyase (
EC 4.4.1.21
)
No genes
SAM-dependent methlytransferase UbiG
No genes
SAM-dependent methlytransferase YrrT
No genes
Serine acetyltransferase (
EC 2.3.1.30
)
PP
_0228
PP
_0385
PP
_0840
PP
_3136
Substrate-specific component MtsA of methionine-regulated ECF transporter
No genes
Transcriptional activator MetR
PP
_1063
PP
_2696
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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