SEED Subsystem: DNA Repair Base Excision in Pseudomonas putida KT2440

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC PP_1105
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD PP_3260
DNA ligase (EC 6.5.1.2) PP_4274
  PP_4968
DNA polymerase I (EC 2.7.7.7) PP_0123
DNA polymerase II (EC 2.7.7.7) PP_2393
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PP_0062
  PP_1642
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) PP_0705
  PP_4812
Endonuclease III (EC 4.2.99.18) PP_1092
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) PP_1365
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PP_5125
Ku domain protein PP_3255
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PP_1477
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PP_1413

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