SEED Subsystem: DNA Repair Base Excision in Pseudomonas orientalis W4I3

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD QF045_RS16850
DNA ligase (EC 6.5.1.2) QF045_RS00855
  QF045_RS22670
DNA polymerase I (EC 2.7.7.7) QF045_RS03350
DNA polymerase II (EC 2.7.7.7) QF045_RS12170
DNA-3-methyladenine glycosylase (EC 3.2.2.20) QF045_RS03000
  QF045_RS14480
  QF045_RS18165
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) QF045_RS27035
Endonuclease III (EC 4.2.99.18) QF045_RS08580
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) QF045_RS24750
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) QF045_RS01270
Ku domain protein QF045_RS16845
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) QF045_RS25045
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 QF045_RS09770

Or select organism:

Or view this subsystem at the SEED (slow)