SEED Subsystem: DNA Repair Base Excision in Pseudomonas sp. SVBP6

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD COO64_RS24640 ligD
DNA ligase (EC 6.5.1.2) COO64_RS17540 ligB
  COO64_RS18560 ligA
DNA polymerase I (EC 2.7.7.7) COO64_RS02475 polA
DNA polymerase II (EC 2.7.7.7) COO64_RS07850
DNA-3-methyladenine glycosylase (EC 3.2.2.20) COO64_RS02195
  COO64_RS07390
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) COO64_RS15635
  COO64_RS22090
  COO64_RS24570
Endonuclease III (EC 4.2.99.18) COO64_RS16885 nth
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) COO64_RS12205 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) COO64_RS12835 mutM
Ku domain protein COO64_RS24615
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) COO64_RS04980 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 COO64_RS16445 ung

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