SEED Subsystem: DNA Repair Base Excision in Pseudomonas sp. S08-1

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC OH686_06060
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD OH686_01425
DNA ligase (EC 6.5.1.2) OH686_02590
  OH686_10800
DNA polymerase I (EC 2.7.7.7) OH686_12215
DNA polymerase II (EC 2.7.7.7) OH686_16850
DNA-3-methyladenine glycosylase (EC 3.2.2.20) OH686_05025
  OH686_12550
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) OH686_09275
  OH686_09345
Endonuclease III (EC 4.2.99.18) OH686_03910
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) OH686_18285
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) OH686_14125
Ku domain protein OH686_01430
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) OH686_06955
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 OH686_05820

Or select organism:

Or view this subsystem at the SEED (slow)