SEED Subsystem: DNA Repair Base Excision in Pseudomonas sp. RS175

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC PFR28_00508
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD PFR28_01701
  PFR28_02106
DNA ligase (EC 6.5.1.2) PFR28_01068
  PFR28_04192
DNA polymerase I (EC 2.7.7.7) PFR28_04624
DNA polymerase II (EC 2.7.7.7) PFR28_01299
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PFR28_03235
  PFR28_04602
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) PFR28_02371
  PFR28_03873
Endonuclease III (EC 4.2.99.18) PFR28_03349
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) PFR28_03441
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PFR28_04272
Ku domain protein PFR28_01702
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PFR28_00339
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PFR28_00677

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Or view this subsystem at the SEED (slow)