SEED Subsystem: DNA Repair Base Excision in Pseudomonas protegens RBAN4

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) FABNJH_09830 ligA
  FABNJH_29180 ligB
DNA polymerase I (EC 2.7.7.7) FABNJH_00420 polA
DNA polymerase II (EC 2.7.7.7) FABNJH_12980
DNA-3-methyladenine glycosylase (EC 3.2.2.20) FABNJH_00085 tag
  FABNJH_23040
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) FABNJH_13905
  FABNJH_23910
  FABNJH_27555
Endonuclease III (EC 4.2.99.18) FABNJH_24525 nth
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) FABNJH_24215 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) FABNJH_29590 mutM
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) FABNJH_05790 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 FABNJH_07490 ung

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