SEED Subsystem: DNA Repair Base Excision in Pseudomonas lactucae CFBP13502

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC GEMAOFIL_01454
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD GEMAOFIL_03237
DNA ligase (EC 6.5.1.2) GEMAOFIL_04318
  GEMAOFIL_05424
DNA polymerase I (EC 2.7.7.7) GEMAOFIL_00284
DNA polymerase II (EC 2.7.7.7) GEMAOFIL_02129
DNA-3-methyladenine glycosylase (EC 3.2.2.20) GEMAOFIL_00219
  GEMAOFIL_03311
  GEMAOFIL_03609
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) GEMAOFIL_05103
Endonuclease III (EC 4.2.99.18) GEMAOFIL_01318
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) GEMAOFIL_04669
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) GEMAOFIL_05511
Ku domain protein GEMAOFIL_03236
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) GEMAOFIL_04722
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 GEMAOFIL_01559

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