SEED Subsystem: DNA Repair Base Excision in Pseudomonas segetis P6

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) ACVTMO_RS03225 ligB
  ACVTMO_RS11055 ligA
DNA polymerase I (EC 2.7.7.7) ACVTMO_RS01575 polA
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ACVTMO_RS01315
  ACVTMO_RS08970
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ACVTMO_RS05180
  ACVTMO_RS13800
Endonuclease III (EC 4.2.99.18) ACVTMO_RS07195 nth
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) ACVTMO_RS17995 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ACVTMO_RS22040 mutM
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ACVTMO_RS07905 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ACVTMO_RS06870 ung

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