SEED Subsystem: Proline, 4-hydroxyproline uptake and utilization in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name  
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) QEN71_RS20260
4-hydroxyproline epimerase (EC 5.1.1.8) QEN71_RS20265
  QEN71_RS34280
Aldehyde dehydrogenase (EC 1.2.1.3) in 4-hydroxyproline catabolic gene cluster No genes
Amino acid permease in 4-hydroxyproline catabolic gene cluster No genes
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster No genes
D-amino-acid oxidase (EC 1.4.3.3) QEN71_RS20270
D-proline reductase, 23 kDa subunit (EC 1.21.4.1) No genes
D-proline reductase, 26 kDa subunit (EC 1.21.4.1) No genes
D-proline reductase, 45 kDa subunit (EC 1.21.4.1) No genes
Delta 1-pyrroline-5-carboxylate dehydrogenase domain protein No genes
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) QEN71_RS24490
  QEN71_RS29240
  QEN71_RS36430
  QEN71_RS36450
Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster No genes
Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain QEN71_RS20275
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) QEN71_RS13720
  QEN71_RS18010
  QEN71_RS31035
  QEN71_RS31370
  QEN71_RS32515
L-Proline/Glycine betaine transporter ProP QEN71_RS05605
  QEN71_RS15975
  QEN71_RS19315
  QEN71_RS20250
  QEN71_RS31385
  QEN71_RS33295
  QEN71_RS33615
  QEN71_RS35345
  QEN71_RS38815
  QEN71_RS38965
  QEN71_RS39400
Microbial collagenase, secreted (EC 3.4.24.3) No genes
Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues] QEN71_RS07995
  QEN71_RS34300
  QEN71_RS41310
Predicted 4-hydroxyproline dipeptidase No genes
Predicted regulator PutR for proline utilization, GntR family QEN71_RS07670
  QEN71_RS11695
  QEN71_RS11725
  QEN71_RS17000
  QEN71_RS20820
  QEN71_RS21285
  QEN71_RS32540
  QEN71_RS32595
  QEN71_RS37050
ProQ: influences osmotic activation of compatible solute ProP No genes
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) QEN71_RS29240
  QEN71_RS34680
  QEN71_RS36430
Proline iminopeptidase (EC 3.4.11.5) QEN71_RS30235
Proline racemase (EC 5.1.1.4) QEN71_RS36500
Proline-specific permease proY No genes
Proline/sodium symporter PutP (TC 2.A.21.2.1) No genes
PutR, transcriptional activator of PutA and PutP No genes
Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster No genes
Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster QEN71_RS20280
Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) QEN71_RS10605
Transcriptional repressor of PutA and PutP QEN71_RS29240
Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) No genes
putPA fragment of control region No genes

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