SEED Subsystem: DNA Repair Base Excision in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC QEN71_RS20335
  QEN71_RS20340
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD QEN71_RS19200
  QEN71_RS22145
DNA ligase (EC 6.5.1.2) QEN71_RS06395
DNA polymerase I (EC 2.7.7.7) QEN71_RS17885
DNA polymerase II (EC 2.7.7.7) QEN71_RS13385
DNA-3-methyladenine glycosylase (EC 3.2.2.20) QEN71_RS29070
  QEN71_RS30145
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) QEN71_RS06135
  QEN71_RS08630
  QEN71_RS29605
Endonuclease III (EC 4.2.99.18) QEN71_RS24560
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) QEN71_RS01720
Ku domain protein QEN71_RS11095
  QEN71_RS22150
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) QEN71_RS05835
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 QEN71_RS27575

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