SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) QEN71_RS22180
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) QEN71_RS33455
  QEN71_RS37290
2-keto-3-deoxygluconate permease (KDG permease) QEN71_RS36675
  QEN71_RS37280
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) QEN71_RS37285
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) QEN71_RS32490
  QEN71_RS33570
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) QEN71_RS08835
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) QEN71_RS11435
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) QEN71_RS33575
D-mannonate oxidoreductase (EC 1.1.1.57) No genes
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) No genes
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter QEN71_RS08830
  QEN71_RS37700
Hexuronate utilization operon transcriptional repressor ExuR No genes
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) QEN71_RS13720
  QEN71_RS18010
  QEN71_RS31035
  QEN71_RS31370
  QEN71_RS32515
Mannonate dehydratase (EC 4.2.1.8) No genes
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF No genes
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) No genes
Polygalacturonase (EC 3.2.1.15) QEN71_RS32170
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN No genes
Transcriptional regulator KdgR, KDG operon repressor QEN71_RS37295
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) No genes
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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