SEED Subsystem: TCA Cycle in Hydrogenophaga sp. GW460-11-11-14-LB1

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) GFF4878
Aconitate hydratase (EC 4.2.1.3) GFF3382
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) GFF3099
  GFF3365
  GFF4314
  GFF890
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) GFF4875
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) GFF4888
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) GFF4876
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) GFF4099
Fumarate hydratase class II (EC 4.2.1.2) GFF4101
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) GFF4515
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) GFF2065
  GFF3372
Malate:quinone oxidoreductase (EC 1.1.5.4) No genes
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) GFF3368
  GFF3427
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) GFF3367
  GFF5817
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) GFF2505
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) GFF2504
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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