SEED Subsystem: Polyhydroxybutyrate metabolism in Hydrogenophaga sp. GW460-11-11-14-LB1

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) GFF2109
  GFF414
  GFF4497
  GFF4592
  GFF4826
  GFF5620
  GFF5662
  GFF875
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) GFF376
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) GFF2109
  GFF4592
  GFF4826
  GFF5620
  GFF875
3-ketoacyl-CoA thiolase (EC 2.3.1.16) GFF1723
  GFF3722
  GFF429
  GFF5633
  GFF5843
  GFF906
Acetoacetyl-CoA reductase (EC 1.1.1.36) GFF4795
Acetoacetyl-CoA synthetase (EC 6.2.1.16) GFF1990
  GFF4967
  GFF884
Acetyl-CoA acetyltransferase (EC 2.3.1.9) GFF3782
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) GFF3558
  GFF4927
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) GFF1003
  GFF1566
  GFF2070
  GFF2072
  GFF2109
  GFF2111
  GFF238
  GFF2746
  GFF2842
  GFF2897
  GFF2983
  GFF3034
  GFF3054
  GFF3395
  GFF3472
  GFF3784
  GFF4130
  GFF414
  GFF418
  GFF4348
  GFF435
  GFF436
  GFF4405
  GFF4416
  GFF4496
  GFF4592
  GFF4819
  GFF482
  GFF513
  GFF5528
  GFF5614
  GFF5622
  GFF5663
  GFF5664
  GFF5669
  GFF5848
  GFF5853
  GFF5854
  GFF619
  GFF620
  GFF726
  GFF882
  GFF915
  GFF918
  GFF931
  GFF969
  GFF979
Intracellular PHB depolymerase (EC 3.1.1.-) GFF4779
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF GFF406
Polyhydroxyalkanoic acid synthase GFF4797
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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