SEED Subsystem: DNA Repair Base Excision in Hydrogenophaga sp. GW460-11-11-14-LB1

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC GFF1241
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD GFF111
DNA ligase (EC 6.5.1.2) GFF4556
DNA polymerase I (EC 2.7.7.7) GFF5584
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) GFF170
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) GFF5140
Endonuclease III (EC 4.2.99.18) GFF4003
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) GFF825
Ku domain protein GFF112
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) GFF739
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 GFF3112

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