SEED Subsystem: Coenzyme B12 biosynthesis in Hydrogenophaga sp. GW460-11-11-14-LB1

Experiments:

Role Gene Name  
5,6-dimethylbenzimidazole synthase, flavin destructase family No genes
ATPase component CbiO of energizing module of cobalt ECF transporter No genes
Additional lipoprotein component of predicted cobalamin ECF transporter No genes
Additional substrate-specific component CbiN of cobalt ECF transporter No genes
Adenosylcobinamide amidohydrolase (EC 3.5.1.90) No genes
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) GFF3979
Adenosylcobinamide-phosphate synthase No genes
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) No genes
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) No genes
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) GFF4001
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
ChlD component of cobalt chelatase involved in B12 biosynthesis GFF3988
ChlI component of cobalt chelatase involved in B12 biosynthesis GFF3987
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) GFF3983
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) No genes
Cob(II)alamin reductase No genes
CobN component of cobalt chelatase involved in B12 biosynthesis GFF3986
CobW GTPase involved in cobalt insertion for B12 biosynthesis GFF3985
Cobalamin biosynthesis protein CbiG GFF4637
  GFF4638
Cobalamin biosynthesis protein CobG No genes
Cobalamin synthase GFF4000
Cobalamine-related hypothetical metal-binding protein CrdX No genes
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) GFF4639
Cobalt-precorrin-3b C17-methyltransferase GFF4634
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) GFF4644
Cobalt-precorrin-6 synthase, anaerobic GFF4641
Cobalt-precorrin-6x reductase (EC 1.3.1.54) No genes
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) GFF4640
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) GFF4640
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) GFF4642
Cobyric acid synthase No genes
Cobyrinic acid A,C-diamide synthase GFF3977
  GFF4645
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter No genes
HoxN/HupN/NixA family cobalt transporter No genes
HupE-UreJ family cobalt transporter No genes
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) GFF3997
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) GFF1380
  GFF3999
Optional hypothetical component of the B12 transporter BtuM No genes
Optional hypothetical component of the B12 transporter BtuN No genes
Outer membrane vitamin B12 receptor BtuB GFF3976
  GFF4678
Precorrin-6A synthase (EC 2.1.1.152) No genes
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62) No genes
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73) No genes
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis No genes
Predicted cobalt ABC transporter periplasmic component No genes
Predicted cobalt transporter CbtA GFF3991
  GFF4635
Predicted cobalt transporter CbtC GFF5545
Predicted cobalt transporter in Bacteroides_Porphyromonas No genes
Predicted cobalt transporter in Mycobacteria No genes
Predicted cobalt transporter in Thermoplasma No genes
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria No genes
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis GFF4631
  GFF4674
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) GFF4306
  GFF4643
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) No genes
Substrate-specific component CbiM of cobalt ECF transporter No genes
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole No genes
Substrate-specific component CbrT of predicted cobalamin ECF transporter No genes
Threonine kinase in B12 biosynthesis No genes
Transmembrane component CbiQ of energizing module of cobalt ECF transporter No genes
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter No genes
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) GFF3661
Vitamin B12 ABC transporter, ATPase component BtuD No genes
Vitamin B12 ABC transporter, B12-binding component BtuF GFF3980
  GFF3984
  GFF5754
Vitamin B12 ABC transporter, permease component BtuC GFF5431
  GFF5755

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