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SEED Subsystem: Queuosine-Archaeosine Biosynthesis in
Pectobacterium carotovorum WPP14
Experiments:
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Role
Gene
Name
COG2047: Uncharacterized protein (ATP-grasp superfamily)
No genes
Dihydroneopterin triphosphate pyrophosphohydolase
No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2
HER17
_RS11860
GTP cyclohydrolase I (
EC 3.5.4.16
) type 1
HER17
_RS12770
GTP cyclohydrolase I (
EC 3.5.4.16
) type 2
No genes
Glutamine amidotransferases class-II (GATase)
No genes
Hydrolase (HAD superfamily) in cluster with DUF1447
No genes
Inosine-uridine preferring nucleoside hydrolase (
EC 3.2.2.1
)
HER17
_RS00100
HER17
_RS00105
HER17
_RS08990
NADPH dependent preQ0 reductase
No genes
NADPH dependent preQ0 reductase-like
No genes
Peptidyl-prolyl cis-trans isomerase (
EC 5.2.1.8
)
No genes
Peptidyl-prolyl cis-trans isomerase ppiB (
EC 5.2.1.8
)
No genes
Permease of the drug/metabolite transporter (DMT) superfamily
HER17
_RS00325
HER17
_RS03715
HER17
_RS06975
HER17
_RS08075
HER17
_RS09795
HER17
_RS11470
HER17
_RS13320
HER17
_RS18345
Putative preQ0 transporter
HER17
_RS00430
Queuosine Biosynthesis QueC ATPase
HER17
_RS15815
Queuosine Biosynthesis QueE Radical SAM
HER17
_RS04200
Queuosine biosynthesis QueD, PTPS-I
No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
HER17
_RS03785
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)
HER17
_RS15995
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter
No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1
No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like
No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2
No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5
No genes
glutamyl-Q-tRNA synthetase
HER17
_RS05575
preQ1-regulated inosine-uridine nucleoside hydrolase (
EC 3.2.2.1
)
No genes
tRNA-guanine transglycosylase (
EC 2.4.2.29
)
HER17
_RS15990
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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