SEED Subsystem: Polyamine Metabolism in Pectobacterium carotovorum WPP14

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) HER17_RS14045
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) HER17_RS09895
  HER17_RS11675
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) HER17_RS00785
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD No genes
Biosynthetic arginine decarboxylase (EC 4.1.1.19) HER17_RS02665
Carbamate kinase (EC 2.7.2.2) No genes
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter No genes
N-carbamoylputrescine amidase (3.5.1.53) HER17_RS00780
Ornithine decarboxylase (EC 4.1.1.17) HER17_RS16680
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion HER17_RS05510
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter HER17_RS10025
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) HER17_RS12500
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) HER17_RS09870
  HER17_RS11660
  HER17_RS14375
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) HER17_RS12495
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) HER17_RS12490
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) HER17_RS12485
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A HER17_RS05500
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) HER17_RS15485
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) HER17_RS09900
  HER17_RS11665
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) HER17_RS09905
  HER17_RS11670
Spermidine synthase (EC 2.5.1.16) HER17_RS05505
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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