SEED Subsystem: Nitrate and nitrite ammonification in Pectobacterium carotovorum WPP14

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) HER17_RS07335
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly HER17_RS09015
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly HER17_RS09020
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly HER17_RS09025
Cytochrome c-type protein NapC HER17_RS09075
Cytochrome c-type protein NrfB precursor HER17_RS09000
Cytochrome c552 precursor (EC 1.7.2.2) HER17_RS08995
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) HER17_RS09105
Ferredoxin-type protein NapG (periplasmic nitrate reductase) HER17_RS09090
Nitrate ABC transporter, ATP-binding protein HER17_RS07325
Nitrate ABC transporter, nitrate-binding protein HER17_RS07315
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit HER17_RS09080
Nitrate/nitrite response regulator protein HER17_RS09115
  HER17_RS09760
Nitrate/nitrite sensor protein (EC 2.7.3.-) HER17_RS09110
  HER17_RS09765
Nitrate/nitrite transporter HER17_RS09770
  HER17_RS17310
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) HER17_RS01845
  HER17_RS07330
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) HER17_RS01840
  HER17_RS07330
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein HER17_RS09005
  HER17_RS17065
NrfD protein HER17_RS09010
  HER17_RS17070
Periplasmic nitrate reductase component NapD HER17_RS09100
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) HER17_RS09095
Polyferredoxin NapH (periplasmic nitrate reductase) HER17_RS09085
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) HER17_RS09775
Respiratory nitrate reductase beta chain (EC 1.7.99.4) HER17_RS09780
Respiratory nitrate reductase delta chain (EC 1.7.99.4) HER17_RS09785
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) HER17_RS09790
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT HER17_RS07305

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