SEED Subsystem: DNA Repair Base Excision in Pectobacterium carotovorum WPP14

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) HER17_RS04045
DNA polymerase I (EC 2.7.7.7) HER17_RS16400
  HER17_RS21470
DNA polymerase II (EC 2.7.7.7) HER17_RS02995
DNA-3-methyladenine glycosylase (EC 3.2.2.20) HER17_RS21160
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) HER17_RS17105
Endonuclease III (EC 4.2.99.18) HER17_RS10860
Endonuclease VIII HER17_RS14965
Exodeoxyribonuclease I (EC 3.1.11.1) HER17_RS12135
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) HER17_RS20815
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HER17_RS17880
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 HER17_RS05755

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