SEED Subsystem: Nitrate and nitrite ammonification in Pantoea agglomerans CFBP13505 P0401

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) No genes
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein No genes
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein PagCFBP13516_RS04615 narL
  PagCFBP13516_RS05610 narL
Nitrate/nitrite sensor protein (EC 2.7.3.-) PagCFBP13516_RS05615 narQ
Nitrate/nitrite transporter PagCFBP13516_RS04620
  PagCFBP13516_RS19285
  PagCFBP13516_RS21150
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) PagCFBP13516_RS01935 nirB
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) PagCFBP13516_RS01930 nirD
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) PagCFBP13516_RS04625
Respiratory nitrate reductase beta chain (EC 1.7.99.4) PagCFBP13516_RS04630 narH
Respiratory nitrate reductase delta chain (EC 1.7.99.4) PagCFBP13516_RS04635 narJ
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) PagCFBP13516_RS04640 narI
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT No genes

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