SEED Subsystem: L-rhamnose utilization in Pantoea agglomerans CFBP13505 P0401

Experiments:

Role Gene Name  
Aldehyde dehydrogenase A (EC 1.2.1.22) PagCFBP13516_RS09815 aldA
Alfa-L-rhamnosidase (EC 3.2.1.40) No genes
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) PagCFBP13516_RS15315 lldD
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) No genes
L-rhamnose isomerase (EC 5.3.1.14) PagCFBP13516_RS09855
L-rhamnose isomerase (EC 5.3.1.14) PagCFBP13516_RS09855
L-rhamnose mutarotase PagCFBP13516_RS09865 rhaM
L-rhamnose operon regulatory protein RhaS PagCFBP13516_RS09845 rhaS
L-rhamnose operon transcriptional activator RhaR PagCFBP13516_RS09840 rhaR
  PagCFBP13516_RS18035
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter PagCFBP13516_RS09835 rhaT
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) No genes
Lactaldehyde reductase (EC 1.1.1.77) PagCFBP13516_RS20945 fucO
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF No genes
Predicted L-rhamnose ABC transporter, ATP-binding component No genes
Predicted L-rhamnose ABC transporter, substrate-binding component No genes
Predicted L-rhamnose ABC transporter, transmembrane component 1 No genes
Predicted L-rhamnose ABC transporter, transmembrane component 2 No genes
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY No genes
Predicted alpha-L-rhamnosidase No genes
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) No genes
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT PagCFBP13516_RS12080
Rhamnogalacturonides degradation protein RhiN PagCFBP13516_RS12085 bglB
Rhamnulokinase (EC 2.7.1.5) PagCFBP13516_RS09850 rhaB
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) No genes
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) PagCFBP13516_RS09860 rhaD
Transcriptional regulator of rhamnose utilization, AraC family No genes
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family No genes
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase No genes

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