SEED Subsystem: DNA Repair Base Excision in Pantoea agglomerans CFBP13505 P0401

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) PagCFBP13516_RS05750 ligA
DNA polymerase I (EC 2.7.7.7) PagCFBP13516_RS00410 polA
  PagCFBP13516_RS04310 xni
DNA polymerase II (EC 2.7.7.7) PagCFBP13516_RS16360 polB
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PagCFBP13516_RS00125
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) PagCFBP13516_RS10645 nth
Endonuclease VIII PagCFBP13516_RS13885 nei
Exodeoxyribonuclease I (EC 3.1.11.1) PagCFBP13516_RS07550 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PagCFBP13516_RS00625 mutM
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PagCFBP13516_RS04060 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PagCFBP13516_RS05115 ung

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