SEED Subsystem: DNA Repair Base Excision in Pseudomonas aeruginosa PUPa3

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD DQ20_RS39205 ligD;go_process=double-strand
DNA ligase (EC 6.5.1.2) DQ20_RS53400 ligA;go_function=DNA
DNA polymerase I (EC 2.7.7.7) DQ20_RS58195 polA;go_function=nucleic
DNA polymerase II (EC 2.7.7.7) DQ20_RS55250
DNA-3-methyladenine glycosylase (EC 3.2.2.20) DQ20_RS46345
  DQ20_RS58655
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) DQ20_RS48135
  DQ20_RS54195
Endonuclease III (EC 4.2.99.18) DQ20_RS41610 nth;go_function=DNA-(apurinic
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) DQ20_RS57365 sbcB;go_function=3'-5'-RNA
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DQ20_RS37540 mutM;go_function=nucleic
Ku domain protein DQ20_RS39270
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DQ20_RS42775 recJ;go_function=single-stranded
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 DQ20_RS44095 ung;go_function=uracil

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