SEED Subsystem: L-rhamnose utilization in Mucilaginibacter yixingensis YX-36 DSM 26809

Experiments:

Role Gene Name  
Aldehyde dehydrogenase A (EC 1.2.1.22) No genes
Alfa-L-rhamnosidase (EC 3.2.1.40) ABZR88_RS01070
  ABZR88_RS01080
  ABZR88_RS01115
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) No genes
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) No genes
L-rhamnose isomerase (EC 5.3.1.14) ABZR88_RS06195
L-rhamnose isomerase (EC 5.3.1.14) ABZR88_RS06195
L-rhamnose mutarotase ABZR88_RS06190
L-rhamnose operon regulatory protein RhaS No genes
L-rhamnose operon transcriptional activator RhaR No genes
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter ABZR88_RS06180
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) No genes
Lactaldehyde reductase (EC 1.1.1.77) No genes
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF ABZR88_RS15185
  ABZR88_RS22260
Predicted L-rhamnose ABC transporter, ATP-binding component No genes
Predicted L-rhamnose ABC transporter, substrate-binding component No genes
Predicted L-rhamnose ABC transporter, transmembrane component 1 No genes
Predicted L-rhamnose ABC transporter, transmembrane component 2 No genes
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY No genes
Predicted alpha-L-rhamnosidase ABZR88_RS02895
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) ABZR88_RS06185
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster ABZR88_RS05480
  ABZR88_RS05945
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) ABZR88_RS06185
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT No genes
Rhamnogalacturonides degradation protein RhiN ABZR88_RS02120
  ABZR88_RS06285
  ABZR88_RS07270
  ABZR88_RS08675
  ABZR88_RS09280
  ABZR88_RS10505
  ABZR88_RS11145
  ABZR88_RS12635
  ABZR88_RS12865
  ABZR88_RS15315
Rhamnulokinase (EC 2.7.1.5) No genes
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) ABZR88_RS06200
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Transcriptional regulator of rhamnose utilization, AraC family No genes
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family ABZR88_RS06175
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase ABZR88_RS02125
  ABZR88_RS02160
  ABZR88_RS02165
  ABZR88_RS02185
  ABZR88_RS02190
  ABZR88_RS06215
  ABZR88_RS06260
  ABZR88_RS06265
  ABZR88_RS06270
  ABZR88_RS07280
  ABZR88_RS10515
  ABZR88_RS10525
  ABZR88_RS13795
  ABZR88_RS21540
  ABZR88_RS21545

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