SEED Subsystem: DNA Repair Base Excision in Mucilaginibacter yixingensis YX-36 DSM 26809

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC ABZR88_RS21575
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABZR88_RS15285
DNA ligase (EC 6.5.1.2) ABZR88_RS11720
DNA polymerase I (EC 2.7.7.7) ABZR88_RS20185
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABZR88_RS20195
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABZR88_RS09800
  ABZR88_RS20290
Endonuclease III (EC 4.2.99.18) ABZR88_RS16725
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) No genes
Ku domain protein ABZR88_RS01220
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABZR88_RS18635
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABZR88_RS00735

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