SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Mucilaginibacter yixingensis YX-36 DSM 26809

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) ABZR88_RS00870
  ABZR88_RS16210
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) No genes
2-keto-3-deoxygluconate permease (KDG permease) No genes
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) ABZR88_RS15325
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) ABZR88_RS08060
  ABZR88_RS12990
  ABZR88_RS13305
  ABZR88_RS18205
Alpha-glucuronidase (EC 3.2.1.139) ABZR88_RS08760
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) ABZR88_RS10495
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) No genes
D-mannonate oxidoreductase (EC 1.1.1.57) ABZR88_RS15320
  ABZR88_RS20510
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) ABZR88_RS08805
  ABZR88_RS09420
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter ABZR88_RS13025
  ABZR88_RS16200
Hexuronate utilization operon transcriptional repressor ExuR No genes
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) ABZR88_RS00290
  ABZR88_RS05685
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) ABZR88_RS06225
  ABZR88_RS06230
  ABZR88_RS16895
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) ABZR88_RS08895
Pectin degradation protein KdgF ABZR88_RS18425
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) No genes
Polygalacturonase (EC 3.2.1.15) ABZR88_RS02195
  ABZR88_RS02910
  ABZR88_RS05425
  ABZR88_RS05960
  ABZR88_RS06280
  ABZR88_RS07310
  ABZR88_RS10520
  ABZR88_RS11400
  ABZR88_RS12190
  ABZR88_RS12880
  ABZR88_RS12955
  ABZR88_RS13125
  ABZR88_RS14885
  ABZR88_RS15015
  ABZR88_RS17865
  ABZR88_RS18580
  ABZR88_RS19695
  ABZR88_RS21720
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN ABZR88_RS02120
  ABZR88_RS06285
  ABZR88_RS07270
  ABZR88_RS08675
  ABZR88_RS09280
  ABZR88_RS10505
  ABZR88_RS11145
  ABZR88_RS12635
  ABZR88_RS12865
  ABZR88_RS15315
Transcriptional regulator KdgR, KDG operon repressor No genes
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) ABZR88_RS13040
  ABZR88_RS16135
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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