SEED Subsystem: Oxidative stress in Methylophilus sp. DMC18

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein GFF1060
Catalase (EC 1.11.1.6) GFF2031
  GFF2119
  GFF2170
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR GFF308
Ferroxidase (EC 1.16.3.1) GFF348
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator GFF196
  GFF2032
  GFF794
Iron-binding ferritin-like antioxidant protein GFF348
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO GFF2492
Non-specific DNA-binding protein Dps GFF348
Organic hydroperoxide resistance protein No genes
Organic hydroperoxide resistance transcriptional regulator GFF1759
  GFF2169
Paraquat-inducible protein A GFF1115
Paraquat-inducible protein B GFF1114
Peroxidase (EC 1.11.1.7) GFF2031
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) GFF1419
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) GFF2631
Superoxide dismutase [Fe] (EC 1.15.1.1) GFF1533
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR GFF615
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family GFF1089
  GFF344
transcriptional regulator, Fur family No genes

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