SEED Subsystem: Polyhydroxybutyrate metabolism in Magnetospirillum magneticum AMB-1

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) AMB_RS15050
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) AMB_RS19750
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) AMB_RS15050
3-ketoacyl-CoA thiolase (EC 2.3.1.16) AMB_RS18210
Acetoacetyl-CoA reductase (EC 1.1.1.36) AMB_RS04300
Acetoacetyl-CoA synthetase (EC 6.2.1.16) AMB_RS03000
Acetyl-CoA acetyltransferase (EC 2.3.1.9) AMB_RS04295
  AMB_RS15045
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) AMB_RS13020
  AMB_RS13470
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) AMB_RS00905
  AMB_RS03265
  AMB_RS04340
  AMB_RS06685
  AMB_RS10825
  AMB_RS10830
  AMB_RS11335
  AMB_RS13030
  AMB_RS13040
  AMB_RS15050
  AMB_RS20905
Intracellular PHB depolymerase (EC 3.1.1.-) No genes
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase AMB_RS02670
  AMB_RS04290
  AMB_RS18850
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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