SEED Subsystem: Polyamine Metabolism in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) GFF2588
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) GFF3404
Agmatinase (EC 3.5.3.11) GFF3030
Agmatine deiminase (EC 3.5.3.12) No genes
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) GFF1473
Arginine/agmatine antiporter GFF1471
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD GFF1798
  GFF933
Biosynthetic arginine decarboxylase (EC 4.1.1.19) GFF3040
Carbamate kinase (EC 2.7.2.2) GFF4437
  GFF936
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter No genes
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) GFF3070
  GFF4604
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion GFF106
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) GFF758
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) GFF3410
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) GFF759
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) GFF760
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) GFF761
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE GFF2355
  GFF4603
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A GFF108
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) GFF2486
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) GFF3409
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) GFF3405
Spermidine synthase (EC 2.5.1.16) GFF107
Transcriptional regulator of catabolic arginine decarboxylase (adiA) GFF1472
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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